NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116250_10046330

Scaffold Ga0116250_10046330


Overview

Basic Information
Taxon OID3300010340 Open in IMG/M
Scaffold IDGa0116250_10046330 Open in IMG/M
Source Dataset NameAD_USOAca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3227
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.8Long. (o)-122.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031881Metagenome / Metatranscriptome181Y
F033394Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0116250_100463302F033394N/AMKSIYIYFIDEKADIYYKDNSKNLHCTINLYTTNKEIREQFRKNLLQRYWDRLEINDIDDLKMIVKDSFVQIFTLQRENFEKND*
Ga0116250_100463304F031881AGGAGGMNSYQFTINKKISTVRVGENKFKFAIDKTGATTINITQDKIEDVIYSVFDNSEYLDLVRIITNIKGTQQVPKIFLQGTGGVGNGLVDSQGCGFVDTTDLVLTDVPISVTKKRMGLELCLDDLVNTTLEVHISNGARNESLDIEDALLAYFTQVLRKNIHNYVFADSVDGILNKILTSGTAVTPTATSNLGILMELFEALPADWKNSTEANPIIFISPNLMTGVRSEIITSSAPITSSIEVVNNRFNLPLTNAVVVATPYLTGTKAVGGIQNYLFLGTDLESDFEDTRIWYSNDNETIRFSAHLYLGTAVADITDFVKYTV*
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