| Basic Information | |
|---|---|
| Taxon OID | 3300010157 Open in IMG/M |
| Scaffold ID | Ga0114964_10002064 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14212 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (94.74%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002722 | Metagenome | 534 | Y |
| F030331 | Metagenome | 185 | Y |
| F036062 | Metagenome | 170 | Y |
| F051640 | Metagenome | 143 | Y |
| F080791 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114964_1000206411 | F080791 | AGGAG | MATYQYNGDEEKVFPTLGVTVKPGDTFDTTDEVISADVTLASAPKKTTPTPSAASDTTQGA* |
| Ga0114964_1000206412 | F002722 | GGA | MAVGRANLRSTLYSYLVGANISTLNQVFTSFPKRINYQVNAGVGQLSRAAAVIFIQSERETRLAIGGATGGWKRVDFTVILQIFHHSVQNNAEDAMADFDTLIDNIKNTLRASHNFGDTTQINVWQGAEPVIDCMYGEPITSDNGATETFAEIRFDVTQMIQA* |
| Ga0114964_1000206414 | F051640 | AGG | MARLVPRDGFAKEVEINRQSGAKVLRADRSGLYSVENPKDIKALKAEGFTESNLALYQEGDVNRGYTCTQCGFGSWFRRCSRCGSEYESAPRTDGD* |
| Ga0114964_1000206417 | F036062 | GGA | MALIHANITVGTTPTPLITLPNGVGYVAVQIQNRDSVAIFIGDSAVTAASGANGGHTVPATTGSFQIWMHGNETVYAISAAGTSTGAVSVLYSA* |
| Ga0114964_100020649 | F030331 | AGGGGG | MSKKINLPSGATVTVKDAVDLKVKDRNRIMRAGDSESQSERGIAIGNALLAAIIEDWSYDLLIPSVKIDSIEELPIKDYVELMKETDSLTKELFPDLTDSVENASDPKVITENSNA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |