NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114964_10000780

Scaffold Ga0114964_10000780


Overview

Basic Information
Taxon OID3300010157 Open in IMG/M
Scaffold IDGa0114964_10000780 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23859
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008072Metagenome / Metatranscriptome339Y
F009735Metagenome / Metatranscriptome313Y
F017814Metagenome / Metatranscriptome238Y
F020318Metagenome / Metatranscriptome224Y
F062386Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0114964_1000078019F017814AGGAGMAQQNDFDFKAFSNLTDRIPAGLQVFLAQQLLSNALWSYEKFDNPRADEVRGIFAEVKALRSNLKADAAARETK*
Ga0114964_1000078021F008072GAGMKRGKAKDKRYTKAIWSKNQKLQAVSTYLMLGSMTETAIVTGIPLPTLKIWKTTDWFKEYSLQLQAEDVQQMDSNLKRVVDKALRAVEDRIDLGDAQFDQRTGEIVRVPVKAHVALKITTDLLTKQEKLRENPIAKEEVEKTIDERLLKLSEEFARFASMKTIDVQGTVLEQA*
Ga0114964_1000078024F020318AGGAGMALEQVTTETFEEWKNHPVTRKLMRMLQADREAMKEGLINNAFEDEQEVKGRCRAIAIVMTLQYEDLFEVN*
Ga0114964_1000078032F062386N/AMHNTLVHEETKDSVTVSIISDGSKNTVFLVTGTIKHEDDSVFDIINTSRLSGNPPNLRLDGTAFMVETGLKVIMSYRDQPFILPIEGRGKTELGWVGGIIGREIDMTFKGTGSFFIVLDVSKMGV*
Ga0114964_100007808F009735GAGGMTIISGVVQEVSTKDASTKYGVKPTYSFKVDGKWIKCGFKNPGVEVGYTVDFDGVTGTYGIETKSVNIVSKAAPTTTSVTSSSTPVAKTYGGGGYKEKVFPIPPLHGDRAIVRQNALARSTDLYIAARGGKSFDLDAGTLDLVISFARKFEAYTAGDLDLEEAIKESGDEELNKS*
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