NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0098047_10182861

Scaffold Ga0098047_10182861


Overview

Basic Information
Taxon OID3300010155 Open in IMG/M
Scaffold IDGa0098047_10182861 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)806
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.201Alt. (m)Depth (m)170
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052875Metagenome142N
F092722Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0098047_101828611F052875N/AELIAAVGPIGALVVIGAWWFATHQEKRNGAKDQTARLKARDAIIQISADVAHMKKDIADIKADGKTTSTTLMQHMAQQHSRSR*
Ga0098047_101828612F092722AGGAGMYFVVADLPFPITFPANWTGVGVSSNEAISQPVQIPIKVVPYKTTK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.