NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098043_1199586

Scaffold Ga0098043_1199586


Overview

Basic Information
Taxon OID3300010148 Open in IMG/M
Scaffold IDGa0098043_1199586 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)554
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005019Metagenome415Y
F055200Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0098043_11995861F005019GAGMYGDVRQCIKCGMSADIVEKGKDYCANCWFKYFSGESIEEYEKRVKQLDQARKNKNEKSI
Ga0098043_11995863F055200AGGAGMLKVKLEPNEVELALNIASKRYIGNLRMGKTFSYGYTKGIKSQLTDGILG

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