NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126321_1041125

Scaffold Ga0126321_1041125


Overview

Basic Information
Taxon OID3300010145 Open in IMG/M
Scaffold IDGa0126321_1041125 Open in IMG/M
Source Dataset NameSoil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2485
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameKohala Peninsula, Hawa'ii
CoordinatesLat. (o)20.147Long. (o)-155.8342Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018518Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0126321_10411251F018518N/AICSALAIERTTTVNSLPLPLELTKPVLLAGDLNSEVRAQMCSGTKSSQKSASLNALGIVQVDATDVQVDDVIA*
Ga0126321_10411252F018518GAGMSLPLPLELTKPVLLAGDLNSEVRAQMCSGTRSSQGSASLNALGIVQVDATDVQVDDVIA
Ga0126321_10411253F018518N/AMSLPLPLELTKPVLLAGDVNSEVRAQMCSGTRSSQCSSSLNALGIVQVDATDVQVDDVIA
Ga0126321_10411254F018518GAGMSLPLPLELTEPVLLVDDLNSRVRAQMCSHTRSVQKCKTYNTLGLVQVDVADVQVDDVIA
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