| Basic Information | |
|---|---|
| Taxon OID | 3300010045 Open in IMG/M |
| Scaffold ID | Ga0126311_10000497 Open in IMG/M |
| Source Dataset Name | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18315 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | UC McLaughlin Reserve (Lake County, CA) | |||||||
| Coordinates | Lat. (o) | 38.8712 | Long. (o) | -122.4276 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000719 | Metagenome | 923 | Y |
| F004395 | Metagenome | 440 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126311_100004976 | F000719 | GAGG | MKNINTKCLIAIALLLMCVPVNASGDDFNSVVNMIEKFYRVKHQSIPFLAKAGMKVATTAARIKGGEAKRIAEAGSIKLAVFENQAFGGDFTKFRASLNGALNDTWMPLIQTLSAKNTEQNYIYLRNAGDKYNVLVINIAERDATVVQVTVSGKNLALLLKDPEGTGKSITEEATIIDQE |
| Ga0126311_100004977 | F004395 | AGGAG | MSKYRLSFLLLIIVFASFSINAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLASENFAVLDDGKPRNISYFTREGQARKPLALVLILDLREDGAGRFLKRTEILKAMEDELAKLPPGDEVAIMAMDVNEDEERLWLTEFTNDRAKLAAALARVPAMCESHEGAPPSEVKKVDTAQGEGKPDDIIETETIRGRNGGVITRKTRRDGTVNVTRTNKDGNVTIELGDVYDMAAAVKEASRKTAELRPNSQTSIVWVSDGIAPIFFEDRDATEQILIRDNVIFNSLTVELRTLFKFLMPIGKPIAGWMGLSLYGSAKYLAQRSGGEAVKVGRVKDYGAGLQRIIGNLTARYSLGFALAEDENDDGRMHSLEVRVNAKDEKGKTRKLQVSSRQGYYMSSTLPKDAAAKAQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |