| Basic Information | |
|---|---|
| Taxon OID | 3300010037 Open in IMG/M |
| Scaffold ID | Ga0126304_10074604 Open in IMG/M |
| Source Dataset Name | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2105 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | UC McLaughlin Reserve (Lake County, CA) | |||||||
| Coordinates | Lat. (o) | 38.8693 | Long. (o) | -122.4282 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011444 | Metagenome / Metatranscriptome | 291 | Y |
| F020086 | Metagenome | 226 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126304_100746042 | F020086 | AGGAG | MSIVDDLVENLVERNALRLNGSFTITLVNGGIGVNGQLFSTLRDQRKNKDVLNINAPIAADVTVGEIVIPLPQIR* |
| Ga0126304_100746043 | F011444 | GAGG | MSDVNTFIDTIGKDINATVSPQIERLAQQITATTFDQYGPRVSAFASQLAKDVIAEQSATVRDFATALIQEIFQRYRPELAGELHTRIVAGALQVTGKDVRLDLKRRDTGAAVSSLDIPVSLTINIDPLGVTLKNATVTLDVVR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |