NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115012_10001023

Scaffold Ga0115012_10001023


Overview

Basic Information
Taxon OID3300009790 Open in IMG/M
Scaffold IDGa0115012_10001023 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16062
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)2.405Long. (o)-13.602Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015278Metagenome256Y
F056152Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0115012_1000102317F015278N/AMTKRKNKLVMCERCDTTVAVIVHEYNYYCADCALFELGIPFKKIVSIDDTSLSRKKQ*
Ga0115012_100010235F056152N/AMQMDTTRRLILESKILMEVMSGLDRMYYLERMWDLYADVYLKIPAKGRGRNRKNTPLAKRKAYELCSKLTKIFGH*

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