NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10021089

Scaffold Ga0126307_10021089


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10021089 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4924
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008274Metagenome / Metatranscriptome336Y
F010871Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0126307_100210892F010871N/AVAAADVPELGEPETRDEVRRRLGEAGCELVYSPASERWLARLDGPVPELEGHDPVLALGTAELAVLATCWLHLRFLPAEGVSQQEQEWVDPDDLAELLGARLNGTGLPSVLERLAKAGYLTLREGRVEAGSLLDTLDEPGAADQARALVGRHQRLAHLRRRAAELDGGDPVDRGSDAQD*
Ga0126307_100210895F008274AGGLDHGHLDDSEREWLRASRRSAARRSWLLIGVLVVAAIVLAWLTVDGLPWTGRAPATTTPDQRVVADGEKALADWGQFAVTNNLSDVKESFWANGPQYKQLAKEAKERTGKPIGPPPYKMTMTGVKVIAPSNRADQRVLRGQVQMTRPGEDPQSFNWDIWLQQDQASDGRWRLWTVRETAGP*
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