NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10001506

Scaffold Ga0126307_10001506


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10001506 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15390
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (56.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010210Metagenome / Metatranscriptome307N
F010550Metagenome / Metatranscriptome302N
F017639Metagenome / Metatranscriptome239Y
F103205Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0126307_1000150618F010550AGGAGGVGERPRRHDEIRGATVVLTGWSRGREREIADALDAISAEPVDLDDVELPFVALPKVTLEKAEAARGLLIDAGGSVDLRDEWVTRDAPRPVAPRPTCPFCGSTKTQPYTHAGPAARTSMKCTTCGQRFRVSSP*
Ga0126307_100015062F010210N/AMDTLDRSPARTTPSKRVENVGYALVAVGYAVMTLGILEVGGLFNVVVGLAGAWTGCVLMFLGEGRRDSDDMAEFRKQLDEL*
Ga0126307_1000150621F017639GGAGMRVPPEDFSVLIEESNSALHLTLGGWLDAEAVTTLLAAVTRARPRDVILDIDPLESVDGAGWLGVIACEQRVAGWGGRLRIDNGIRKVLDLASS*
Ga0126307_100015063F103205GGAMTTADAVREHALALARTAVDRDEAVRELEALCGGRRVAVVKARQQVLSSPEGSEEPAAGRAVELLDELLGRLPA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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