| Basic Information | |
|---|---|
| Taxon OID | 3300009707 Open in IMG/M |
| Scaffold ID | Ga0116195_1004395 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6084 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Chengdu, Sichuan | |||||||
| Coordinates | Lat. (o) | 30.66 | Long. (o) | 104.06 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037746 | Metagenome / Metatranscriptome | 167 | N |
| F053881 | Metagenome / Metatranscriptome | 140 | N |
| F070633 | Metagenome / Metatranscriptome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0116195_10043954 | F037746 | AGGA | MGCPSHWHAKRIGGNPMPIDIELAKANDTVGQEFESNYIPGTTDKDLEDARTLMEKLLKKYGSRDVLEANELDWVKYKRAMYVVASRSKDTMDAANKAREDLIKRKNLLSQFFDDNREILFKLPDWARINLRKYTDYGLLVDQEYLWQALGELGEDGLTKHLLNVANYIYLDTGFLGGTREDYDALQKGPVRSIYHRPTCKAQKTVHPDCGSSCNKV* |
| Ga0116195_10043955 | F070633 | N/A | LGGNDTGLRDRAKNRLVLDVSHSQGDEGFIYSVRHHLPLGPKKCTGGFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKIQLVFDYDKGFMTGVLGGVLYDTFEIPKQEGTDYHG* |
| Ga0116195_10043956 | F053881 | N/A | MTGLLKISKESLGEKERKLYSKLYKHIIESFEIDEIAADQISLALVCQKCILLPRLLSGEDVDINQASESIRKWLSEYRLTPKSREKEKEVTINLSAIIEEIHRERENPN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |