NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115002_10124228

Scaffold Ga0115002_10124228


Overview

Basic Information
Taxon OID3300009706 Open in IMG/M
Scaffold IDGa0115002_10124228 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2079
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059026Metagenome / Metatranscriptome134N
F066809Metagenome / Metatranscriptome126Y
F070556Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0115002_101242282F059026N/AMEHIQDYKLFKESLDTESLNEAFSSGILRDLSSQSSGRWGGDLAKDMQKYANLALDKISDSDFTTTSPEAYWKSGDAKNPNKVGFFVDDDKGFLKWAKANKKYLPGSITLGNISKYGLVLSVVRGGVGMWHGFATDRGGSYSRHRKGTEERYGVLANEYDTGSVYNGWERNVVPKVTRKNLIETATRVYVLDLDSLRDKYDVSGLQQDRANSKAGATALKSAKDIKAENKKRYQAILNDSAAKTDIDKAVRDSIALLNQHISDALEKGEMDQYGNFQIGLNPKGRPVSVKDGAQYIQKILDEYQRYKDYERQAKDDERGEEGYYAKELKSYAKSIQDKARLVRDKNYGW*
Ga0115002_101242283F070556N/AMGFHKRYISDNQIIEIYRSSGNQAVIDWYTKGVDALIISGDLANKVEELICSKPVIETEAWNEISELISDASIKKGFSTIEKNNSRLVE*
Ga0115002_101242284F066809N/AFSARDFIELMAAFGQELSTVVQKVHTDNQALRDNHVKLSELDTEVNHPDVILDVAIDKYNEAEADLQNLMNEVDPVVETV*
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