Scaffold Ga0115000_10104289

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115000_10104289

Scaffold Ga0115000_10104289

Overview

Basic Information
Taxon OID	3300009705 Open in IMG/M
Scaffold ID	Ga0115000_10104289 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1907
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	77.0991	Long. (^o)	-150.2252	Alt. (m)		Depth (m)	58
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016596	Metagenome / Metatranscriptome	246	Y
F018080	Metagenome	237	Y
F052205	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115000_101042892	F052205	GAG	MTDWIDEALDGKPTEITNSQWLTIEGNIDLTSLTHSMKSEILSDLNYLSEIEAEEIITILYNNRYEKDPQKQWLKMFRDGVFGNRDF*
Ga0115000_101042893	F018080	GAG	LEIEIFKHFLKVYTYVVWNKKGMLGLIIEDDITKLLDDKQILDFYHFDKTSFKVKASNIEQYLKGND*
Ga0115000_101042894	F016596	N/A	MTKKYSLIKIRESRNEFEALLRIYGISNLTLCKVIGVNYATSRNFIKSPSTLRFIHAQRLADFIGLKVQDIVDTIVYDLT*

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