NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116186_1044616

Scaffold Ga0116186_1044616


Overview

Basic Information
Taxon OID3300009689 Open in IMG/M
Scaffold IDGa0116186_1044616 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2541
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)37.43Long. (o)138.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012026Metagenome / Metatranscriptome284Y
F061870Metagenome / Metatranscriptome131N
F080087Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0116186_10446161F061870N/AMKRRIQKLETLTAWKALPDASEYIQVWAIDPDQDEAEKWFETRAGARVTDPKTIERLIAYYNEALRRGTVNVTARFEDYDDPEDSTGNGA*
Ga0116186_10446165F012026AGGAGGMNLRELQASIANIIGKRAEAMDRLNRLTTIDDRFNPENITAINAFKQAIATLSEELTRLERERAELLEVEEAARREYVAALNAYDEIYGRFPNAEKEAGELLKRYAKITEAAEKARSIVLEKMNALTAVAGGFLPLPPAPAHAWRTYAKDYAFEIERGGE*
Ga0116186_10446166F080087N/AMEHATAWETGENEYDVRVPARYREYTCAHRVVAIYRRYGIITDYQYRVSKKELEEIERIVETRIEQTNNKGGQK*
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