NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116190_1050240

Scaffold Ga0116190_1050240


Overview

Basic Information
Taxon OID3300009655 Open in IMG/M
Scaffold IDGa0116190_1050240 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1784
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.65Long. (o)135.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010099Metagenome / Metatranscriptome308Y
F053314Metagenome / Metatranscriptome141N
F067884Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0116190_10502401F067884N/AETDAPGLRPGQLLPVDIPAAGLGDNYLVESVSMRDMQGAVNRYTVTAVSGDALGGWLEWFSALARQAQKFVLYDEDQVGILKVVVDTVIVTDSAVEYDWGTVDRKPESRVDRAHADFAETDWVHA*
Ga0116190_10502402F053314N/AMRSTVTVRDNVVVRVWERGAVVRTYRTHNTWGAAGLNAIRNWFSGLGGTPVTHIAWVDAGGVERARDVVTQRVLPGDGSLLIRQYLPSATSANGHTLTTIRAYNAQSGGTRFAEAVFDAIGIAKTANNQITVEWTHTFADGGA*
Ga0116190_10502404F010099AGGMTDDKTSFWTPARTVAVVIGAVLLVVALAYLVSLPQNKYHPCDLLEPTYAADADLGYWMVDKYDPEVDVYHLLVVVEHPNGTYEWLDGDGIWLPRRAVEGTFTVIGSFD
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