NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115011_10198102

Scaffold Ga0115011_10198102


Overview

Basic Information
Taxon OID3300009593 Open in IMG/M
Scaffold IDGa0115011_10198102 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1482
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014069Metagenome / Metatranscriptome266N
F026154Metagenome / Metatranscriptome199Y
F038858Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0115011_101981022F026154AGGAMNGIINFVRFIAYSVGAVAVRKSWNWLTTDVDPIPFTKEFDEEYAQTKAKYIRLTKKKEEYEAYRKNRRTRS*
Ga0115011_101981023F038858GGAGGMKRIEKIGEHAVKAFTLPIRICVGIYKCIEKATPETLEMPFEIKRKEENNGNSESTN*
Ga0115011_101981024F014069AGGAGGMETVKAPINERVATKVMPLTKWFVEQYFQTYEMMSSDPRFKALPAYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE*
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