NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115013_10196392

Scaffold Ga0115013_10196392


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10196392 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002344Metagenome / Metatranscriptome568Y
F008944Metagenome / Metatranscriptome325Y
F053219Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0115013_101963922F008944N/AMKKFNGMESKLIVDALDCYVTQVEKDILELEKDGKRSIFAPGFYTNISKELKDKVKSMTKKQQV*
Ga0115013_101963923F053219N/AMKYAIFDMDDTLCTLEHRRDKAMESGKMNYKILFDSKLVEYDLPEDHVVDLAQTLNMFNTKIIVMTARPYYMEEATKKWLKLHNIPFNKLITKEKNKVFQKSSLWKESKLQELLEDINIEQVVLSIDDNKDNQAMFESYGIPVFDPLLQ*
Ga0115013_101963924F002344AGGAMLYDKLKPYIKDKLKSQAEEYSVSINSVFNTLKQKHSYSDLTIEEIRSICTFGDVWYYDLTQKELIWGDWLTK*
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