NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116220_10185421

Scaffold Ga0116220_10185421


Overview

Basic Information
Taxon OID3300009525 Open in IMG/M
Scaffold IDGa0116220_10185421 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)899
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003608Metagenome / Metatranscriptome477Y
F094197Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0116220_101854211F094197GGAGGMKNLMTPNITLVIVLLAAMAAIALRAAARRPETRWAPGAESAPITVRTPGPPGRPASVVEQMHDIFHELHADGRNAACTVCDSKYWPA*
Ga0116220_101854212F003608N/AMAAGRVMKRIRVDRPRIRRERAWTEDPPADPRDPDVVRAKALARARLAGSSRPSQAR*

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