NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127412_10002952

Scaffold Ga0127412_10002952


Overview

Basic Information
Taxon OID3300009492 Open in IMG/M
Scaffold IDGa0127412_10002952 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 6-8 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1551
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Methane Seep → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameUS Atlantic Margin
CoordinatesLat. (o)37.5409Long. (o)-74.10211667Alt. (m)Depth (m).06 to .08
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007026Metagenome359Y
F019817Metagenome227Y
F020342Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0127412_100029521F019817N/AMPATATPALTLNQRNLYAYFLNHKEKHSHIPCFVPKLPAQSSRLEQYLQALNKLEQYELIRVDRTSVNYTGWIMLEPKSA*
Ga0127412_100029522F007026N/AMPYPEINWTKNEYKQLEQALDILKAVIERESKRHQMDEHLVPGDNDIVQEAIGLLEEIIDYDPTPNDPGEPPITLDEMHTAAWKEHQAMHS*
Ga0127412_100029525F020342N/AMSAVTDSLNMFDRINLAACARRRASANVLNSTRFEGEYDTARLWMKYRLVKYTTHSYIDE
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