| Basic Information | |
|---|---|
| Taxon OID | 3300009481 Open in IMG/M |
| Scaffold ID | Ga0114932_10013879 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5899 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kolumbo volcano, Aegean Sea | |||||||
| Coordinates | Lat. (o) | 36.5264 | Long. (o) | 25.4868 | Alt. (m) | Depth (m) | 470 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| F005720 | Metagenome / Metatranscriptome | 392 | Y |
| F049044 | Metagenome / Metatranscriptome | 147 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114932_100138797 | F002093 | AGGAGG | MAYDQSIPAGGPGNFQTPNLAHEGEGVRVDFITVDYISDVSAEVTHSTASAATAGLKLSMDAIQNQGVNILGHGALGNSDTEQTYMVRADALDTISSTTTVAAIQAAIRALDGLTPDKVTATISSATAGDRDMSDTQVA* |
| Ga0114932_100138798 | F049044 | AGGAG | MAYSGSKVAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDMSAETGDLTTGSTTAGLQMVRHAFEHQGLRILAEGPLVDSNTQKTYMVRTDALDSLSSTTTKAALQAYIRTLDQSSSSFPGIAADITGATVTETKIGILTANAVS* |
| Ga0114932_100138799 | F005720 | AGGAG | MPATSNATANMSRRQSFNGKGLTFIEMMFDDEVTTTATTPDTKASVFNDMSRLVGTFGTILAQSYTLGAKATEKDAAAAASIVEDELCDYYSFIVEGTPGQFNAADSAGDINLDPDQANASDPGVIAAAEADIETEILARISGSSDSAGGVHVDVRYLPADGVTSAGVDEVYGVNSARVNA* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |