NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115555_1068019

Scaffold Ga0115555_1068019


Overview

Basic Information
Taxon OID3300009476 Open in IMG/M
Scaffold IDGa0115555_1068019 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110407
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1570
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007947Metagenome / Metatranscriptome342Y
F012403Metagenome / Metatranscriptome281Y
F035971Metagenome / Metatranscriptome171N

Sequences

Protein IDFamilyRBSSequence
Ga0115555_10680192F007947GAGMLNCHTILCLQNQMPDVGMDDLLVIGYLVVGLAIIIYLVMDALKEK*
Ga0115555_10680196F035971AGGAGMGNYWNEVAQTEADKRYMDMYGLSQLDMEDMLDEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSDSGLVTTPTTNTNIQTN*
Ga0115555_10680197F012403AGGAGMRIRNTINPVAKALLQGNRRRSQVVPDKKKYNRKKDKQDANQAGKYEEPKDN*
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Institute for Fundamental Biomedical Research
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