Scaffold Ga0115559_1137203

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115559_1137203

Scaffold Ga0115559_1137203

Overview

Basic Information
Taxon OID	3300009438 Open in IMG/M
Scaffold ID	Ga0115559_1137203 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	919
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008684	Metagenome	329	Y
F048298	Metagenome	148	Y
F084262	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115559_11372033	F048298	AGG	MNKQFLFWREVNKRVREECTIEAKDLDEATKLHNEGYCDYVEVDALDEDEILDEGTTESEVK*
Ga0115559_11372034	F084262	AGG	MYIIDYPNQKIKKYSINELESNLNTIVKKRWIFIKDKNKAKKFINQVSLNRKGNK*
Ga0115559_11372035	F008684	N/A	IINNDNFDMACQLADDIYFKFIDSLDSKKASEFVIPDKDNIGSTKNTEKGSELYWDIEDTIKNTLDNRKV*

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