NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10103257

Scaffold Ga0114994_10103257


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10103257 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1940
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000993Metagenome / Metatranscriptome811Y
F015946Metagenome251Y
F058446Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0114994_101032572F000993AGGAMTKLHHTEYKKNYKKYILSTIETDNEDKPLKTDQDKIQYIFDRFYSEYYCHNMPLRIGKYKAMSEWLSGLALNIEYYYEDIVKLAVKMGSIDENPNDKLRSKVEQGYWDFMANIILGFEPKKVA*
Ga0114994_101032573F015946N/AMYINNKLTKRETMNKYKIVDWMNNRIFPNKIFKSFEDGWEYIYNKFDNEEDHQEYYVVNISEKERGQI*
Ga0114994_101032574F058446AGGGGGMPNKLIEKIKAYLKEIDLDSLQHKYEDQSINDDFIQYEPLPQIYIDSLDDSNKEKMLQKIADRNGF*
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