NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114982_1000532

Scaffold Ga0114982_1000532


Overview

Basic Information
Taxon OID3300009419 Open in IMG/M
Scaffold IDGa0114982_1000532 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20461
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (76.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F009144Metagenome / Metatranscriptome322Y
F032097Metagenome181Y
F051925Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0114982_100053210F000264GGALTYKGYNDIMKMYTNENWLRKRFLMDKKTPEDIAKECGVSVETVYVYLGKFGLRKSRRK*
Ga0114982_100053229F051925N/AMTKGFQYDFFSEEWYFECGACSTELYAPTKKHMEGNFWIHTHSKECLGGW*
Ga0114982_100053233F032097N/AMLLKKLREQFKMEFELYHEKDAGPIVRWFANKMLSILHKVEKPLYDYADMYTAVWDDYEDESDLAEPHNQMGIFDNLETLPQFERLTEDLI*
Ga0114982_100053242F009144AGGAGMFKEIDYNKHFVIGTPLVGWKADMGEEMSWLENSKQIIEKFPNAKFFTALELDGRGLEPFQRVLNALKEINGDFWTYTINDMEAQVNSGNRWIRIETGRNLIREFAQRFRKTSGHHWGEDCTEENFGVVNYDAILYVDSDIILTAEIIEKLFEIDHPIVSADVPVYGLRGTVVSENPRIEEHWNTAGMLLVNSPAFYDLPWYHNSYLNLSDDPTFQSMAERLKKRVGLENLEETYGMTWVRKDIHADHKGTLIAVEQRKIPPRNI*
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