NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114908_1054138

Scaffold Ga0114908_1054138


Overview

Basic Information
Taxon OID3300009418 Open in IMG/M
Scaffold IDGa0114908_1054138 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1430
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.31Alt. (m)Depth (m)2520
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F032307Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0114908_10541381F032307AGGMVVQKLLLQEGLKRTKQYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATIQGGSWLNSIAGFFNIKFPDTLPEWLTKLFTT
Ga0114908_10541382F000730N/ALVNELIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVSDQQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI*
Ga0114908_10541383F000704AGGVAKMPHVDTRSEPSSVKSVSVYNVGDYGEDLFLPFTDVGLTETSITFSTATVTRDTEDSNQPMDDFPAVYSDTDTGVLLNEGNNTAFSQTYSYNPDMTAIIYAIHLSFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTGTGTSLHFFQRDVVETILVRKGNPIDILVELVTVTTGTNTRQEGIVNLAPYIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ*
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Institute for Fundamental Biomedical Research
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