NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114993_10177112

Scaffold Ga0114993_10177112


Overview

Basic Information
Taxon OID3300009409 Open in IMG/M
Scaffold IDGa0114993_10177112 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1655
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017220Metagenome242Y
F020442Metagenome224Y
F031262Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0114993_101771122F020442GAGGMNNVKKSAIEKLAKMGLTEEEVLSLFDEDEAEETTIVAEDGEPASDSSGGSKSWQQLVMEEHVGYYNIRYDTNLTFDEYYEGVTNGELEVHYNWKQLLGLEEQAPVPVSENVNEEKFKKHGNRS*
Ga0114993_101771123F017220AGGAGMNDARLISISEKLNKYVAMIRTQNPNMSEKDIVDRAATLAVTEQKNFEAKAGIVPTDAVADRFGDGTRIDTAEDGTSIVRVSNAWQQGKGSKISSEGFHKKDHSTITMPKDIDITTPEGDKRAGKFIEEVKAAKKRGAKLQAEADHDAWENRKVQVTVDKKEDAHAGQKD*
Ga0114993_101771125F031262AGGAMKLEIGKTVSIMNDYMEVVTGELSAVDSDSYDDVKLDNGEVTYWSKKKKMYVPVREKHKNSIFFEIKTPLGLEYASEKELF*
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