| Basic Information | |
|---|---|
| Taxon OID | 3300009228 Open in IMG/M |
| Scaffold ID | Ga0103854_1012181 Open in IMG/M |
| Source Dataset Name | Microbial communities of water from Amazon river, Brazil - RCM7 |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Georgia |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 877 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Amazon river | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009320 | Metagenome / Metatranscriptome | 319 | Y |
| F031403 | Metagenome / Metatranscriptome | 182 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0103854_10121811 | F009320 | N/A | RFWLRGVPIALPHDAAQAGRYTLSEQSVREVFEDSYGLNCIPGAILNPVNDQGKVTNHKSYGINIMRLGMERGTFRINESCLAFLDEARNYAIDEQGRFSDPDDHIDSARIGILALIQGHGETVVSRANTFSSRRFEPIEGKAQRI* |
| Ga0103854_10121812 | F031403 | AGGA | MLNKQNIIVEYIEAPASNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVDFQFDRFSESDSEQSNQATEMVKYMINSKNDSYQVIRDWAQDALLHK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |