NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10005248

Scaffold Ga0114974_10005248


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10005248 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9655
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019798Metagenome / Metatranscriptome227N
F025224Metagenome / Metatranscriptome202Y
F028490Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_100052482F019798AGGMTTLVAIQGDGWSVLGCDSRLSDEHGRFQIAKTPKIVENNTILIAGCGSSRSSNVLHYGYVQPKPTLKEDLNTYMTTKFIPQMRKNFIDAGIDMKEDGDVAQIDGGFLVSVKGQVFSVSEDYSWDTDVRNVYVMGTGGDVALGALAALGVEKVKTVNQAENMIRKAIAIAIRYDNMCSEPIHTFKQYA*
Ga0114974_100052483F028490AGGAGMAENRGGANGGPQYNPANVSGTGGAGQSGNYTGFAYGQNQTVNNQRIEGNQAMASAQAATPSAPASPYEGINMPQLGTLFDPTTRPDEPITAGVDFGPGPGSEALSRSVVANTRIDENAKIAQQYLPDLAMAARSPNAPDSFKRFVNYLIENSQGSNTNG*
Ga0114974_100052484F025224AGGMADVAWMPGSLFDNIDKFANSLGYQNAGIVMELSMISWKSPEERDAFIVSVTGQGAQGGTEKNYIKRNF*
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