NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10002261

Scaffold Ga0114974_10002261


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10002261 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14816
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (61.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019426Metagenome229Y
F028070Metagenome / Metatranscriptome192Y
F041564Metagenome / Metatranscriptome159Y
F042147Metagenome / Metatranscriptome158Y
F064358Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1000226111F041564AGAAGMEYDPSDEEHREIMERLVEEGAAIFDGVDEDGGPIYKFDLDVLEEVSPELYQVMMDDMDEILLDLYKKGLIEISYDEELNAQMSISPEGREALIEAGFDMSEFENNDYEEKEF*
Ga0114974_100022612F064358GGAMLCYSCGKQKNELQPKKSDIMVGATLLMCQTCVDSKFEPRWVIILCGRQKGPESVRDYIIKHRYVGKTITAEELIA*
Ga0114974_1000226127F042147AGGAMLANGTIKTIEDDQDIYISLTSLCEYFTKSAVNMNREVEELGTNDQRYAQGLLDMMHTIAEEMVELGKFEAQRRMIDSPDDLLRMIDKNPFGKIE*
Ga0114974_100022614F028070N/AMAKRVRDIKCPVKGLMLDVRARPNYLALTVYESNIMEYSESQRMNVMEYLLMVRKLIQSYGTPCEIEGMKYTDEQARAKRQ*
Ga0114974_100022618F019426AGGMRVLVFGSKDWTDYNDLIRQITVLIDDRKHFYPDDTEYTFVHTGMRGAENMVTEYIGKTEKFLRQKGYRIKEEIIRDKSQLSDVSLIESGPDFAFVFGESPRNRSCASLLESYGVPHRYIKE*
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