| Basic Information | |
|---|---|
| Taxon OID | 3300009182 Open in IMG/M |
| Scaffold ID | Ga0114959_10000063 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 96017 |
| Total Scaffold Genes | 144 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 113 (78.47%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005167 | Metagenome / Metatranscriptome | 410 | Y |
| F006979 | Metagenome / Metatranscriptome | 360 | Y |
| F008023 | Metagenome / Metatranscriptome | 340 | Y |
| F008806 | Metagenome | 327 | Y |
| F009327 | Metagenome / Metatranscriptome | 319 | Y |
| F010448 | Metagenome / Metatranscriptome | 303 | Y |
| F012098 | Metagenome / Metatranscriptome | 283 | Y |
| F014843 | Metagenome / Metatranscriptome | 259 | Y |
| F016389 | Metagenome / Metatranscriptome | 247 | Y |
| F019092 | Metagenome / Metatranscriptome | 231 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114959_10000063122 | F016389 | AGAAG | MPLIRKFAVQGHAVPATAHSPRGPFPPEILEQPRMQDSDYQSDSLHAGLDDVRFFKCKDCDEIMLEAELDTHECDDE* |
| Ga0114959_10000063125 | F012098 | N/A | MPKVHNIGPKYFIQLLDLPVIWGNKIMVRGWTQEIEEPFRTANPFLVRLPKYKAVAFGKWNGFKTEEEALKSALNTREVTYDDFTEEAGWTSPNSDRETSSEDSYSRLDSLDGTLNVHDWQTHYRMAKESEQ* |
| Ga0114959_1000006313 | F008806 | N/A | MSFLLEEDKAIRDLLKGMVVTDQKSVTEAGPQRNVDVWFGQPDQEIRAQSYPYITIDMIDVSEDFQRSMRGLVKPPYLQDPTNMVDGVQATQSVQGVDEVPYDGTVHNWYIHYPIPVNIDYQITTYSRQPRHDREILAQIMYTKIPLRFAVLEVGNNDAQGTLRRLDVLDISKRDVTEQGKRLFVNAFTVRVSSEIAPETYTQVYKALQVYATGPTDSGSQVIGRGTFTPISFTISS* |
| Ga0114959_10000063132 | F008023 | AGGAG | VANTPTSPLDATGRAAEQAAKKNAKAIKDRKDEISIAAQVEAESLENNIFDPKKPDTPLVLDEIENVGVTTANDTVIIRTITDIEEMTYGVGNHYTFKAGVKYRVSRGLANYLEQLGYIWRPN* |
| Ga0114959_100000633 | F009327 | AGGAG | MRGSKVQGRFKIDFENKSMEEGVVDELRDPVGTEVDWWVFDQNYLETHPTDVYDDTYDTSNQEAGKGRRWNTPIKLPVIMAQQLRGTNIMNERGFYVVDTLRLVVSVADVNRVLPVMLTDPNTHIKDRAVFQGEVFVPTRVLPRGRYSNFYSVITIDMNLVNSEELVNDTQFQTYAN* |
| Ga0114959_1000006336 | F010448 | AGAAG | MKNGDISNVSSPQVIVTATLLLTLNLEEEKRLLSKKKLVKVGEIDLLAANKLWIMTNNYGVSLELAGFEDEGWTEELLDKAFEKLERRAVNPFNYWQLYESPHEIVGLLPYRANLKAVIDVPGRVAMYGSAGVQLDNI* |
| Ga0114959_1000006362 | F005167 | AGGA | MAVNSSRSMNSSLNEGSTDGKYRKARPDTEVIPGLGDEATLDNRQSLHPFYGFGFLTSEYPNKVNPGK* |
| Ga0114959_1000006366 | F019092 | AGGAG | MSNIPVLGEKKMDNEPMFRLLYCLVCQTLEELPPYDGIPEQDHLLAIACEQHVFPSGEPHKGKLFVVPLRAWAKSESKKEIIRQIKSGGSKGLAEIDDTFYESRSTFLEGAMECYKRHKKPKDGCDDWHAKDRLLVPNTIKERKSEGMARYQDEAGPKTYLCDFCPVAIGVAQRKRKLLGIEP* |
| Ga0114959_1000006369 | F014843 | N/A | MTSRHTEDAKHWLQSHGIINYDDLIDSSFALEGEDLKKRQFTLSRSRAPIEMYVDSDPTMCAWVFEEQHIPAVLFSHPGFAAVENRPDAPKKVRRWSDIEASITRVNISRSENAQKPKEAELWSD* |
| Ga0114959_100000637 | F006979 | AGGCGG | MSKTFKADGEKHTVKKNKNGDVIVDHAGNKGKWDKINLTKKAGAKNIQQGVKAVKKYHRTTGK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |