NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114969_10028552

Scaffold Ga0114969_10028552


Overview

Basic Information
Taxon OID3300009181 Open in IMG/M
Scaffold IDGa0114969_10028552 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3868
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009945Metagenome310Y
F016922Metagenome243Y
F037053Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0114969_100285523F037053N/AMNTPTVDEIIADLESRGLGWSLDNTGRLIEARVWDWPHVIGRYRPAKTEPLAKMLATACFAVDWTAYPVKP*
Ga0114969_100285524F009945GAGMSTALAIFKRDNGVATHRKAGAGHRYPWMAFFSTITMNDGTRRGFADVAAEYSMAALIGRNKVVDGDTEEESCKLLAELNGIPWPAEEPKKRKAKP*
Ga0114969_100285529F016922N/AMSNQNPIKISSRAIRCVADAEGATEYAVRYGGRDFIVTAHSRADAEDAAEYYRPETADESQPDLLK*
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