NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114969_10000357

Scaffold Ga0114969_10000357


Overview

Basic Information
Taxon OID3300009181 Open in IMG/M
Scaffold IDGa0114969_10000357 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39061
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018164Metagenome / Metatranscriptome236Y
F020883Metagenome221Y
F042747Metagenome / Metatranscriptome157Y
F053803Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0114969_1000035733F042747AGGAGGMMGYKYADIQKFGTALNRAEFYLPPSDTETREGLTQVWDFFEGLLAEGYVEGEETA*
Ga0114969_1000035738F020883GAGGMEASFMIAQVETTMSNYTNQHHRLGMRDLAIWQSLGSYYADPEDYDIVLTSTREEAFDRMVADHWHVRVSDAFFGLDYEGIDEEVLDYLKGNKLVASTDEEEEE*
Ga0114969_1000035758F053803AGGAMAIDIELTLDETMDALRFIHLVRENKKQYEVVDKKFDRNNSSYSVNLMGQLGEMACGKGLGLQVDRSISPSGDNGHDLSTPLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQLPHVDSKFSILGWTTRELFLANHYKHDYGYGIRLVMDADQLQPIEVLINEVSRL*
Ga0114969_100003578F018164AGGMAKVFRGPTYKYRPGREYDLWFVSYPIGKSVVKTGGVWKTIVVPQDSDLATYQRVLRGGYDNVITDAEAVELAAAGYGDYVFNV*
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