NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105248_10730007

Scaffold Ga0105248_10730007


Overview

Basic Information
Taxon OID3300009177 Open in IMG/M
Scaffold IDGa0105248_10730007 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017742Metagenome / Metatranscriptome239Y
F020926Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0105248_107300071F020926GAGLSEYVSDNLNFTFDKRNWDVAFLPDRMKRVLVILLLAVGALAGDKPTVAQCFQVHSLTRTDGEHYWADWTNACPYTIDSVYVMIDFWDKFHKRLGDGVWGLHFITQGAHRVTRFSAP
Ga0105248_107300072F017742GAGGMTGLLYCQQAKELLGALSEAIRELIVLHEEQFQSLLGGDLDSTRFDPLIHMANERKNEAKYAYLHHLETHGCSKWNEPDKK*

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