| Basic Information | |
|---|---|
| Taxon OID | 3300009172 Open in IMG/M |
| Scaffold ID | Ga0114995_10055565 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2253 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031256 | Metagenome / Metatranscriptome | 183 | N |
| F039823 | Metagenome / Metatranscriptome | 163 | N |
| F041489 | Metagenome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114995_100555653 | F039823 | AGGAG | MSNKTLNVSYWKQSTGKTGQCLSERGQKIFDTLTPIYEEVVGLPLSKMKVYGMALEMSRQGRADEGFYMQNTATTAFMVLVQDMTSICRAIRKGKEVKSISYGTFNVSNLKNVAKSKLGRKKKVA* |
| Ga0114995_100555654 | F031256 | AGAAGG | MTIPYWQVGIKIGVESGQVNVHSDALPDASFEYAIEHAIETARAVHPTERIEFLYVKEYN |
| Ga0114995_100555656 | F041489 | N/A | VVYNNEGDYLMTILVADIKFYAVDDDGNEVLNKEGTHIQLYQLKRDIRFKPLEYLCEDMDMDILEEITE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |