NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114970_10007599

Scaffold Ga0114970_10007599


Overview

Basic Information
Taxon OID3300009163 Open in IMG/M
Scaffold IDGa0114970_10007599 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7719
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001338Metagenome / Metatranscriptome719Y
F002038Metagenome / Metatranscriptome600Y
F005588Metagenome / Metatranscriptome395Y
F015597Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0114970_1000759911F002038AGGMTSPLPAGIERIARTVTGQYALLLLLDGYPYVEMTARKHADFLSDLGLWKRKTHPSLARSQVRFFTLAPNGEIKELTFNR*
Ga0114970_1000759914F001338N/AMTTENNDRPPLTSISTNGTYRLKLIKPKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSTKYGKALAMLVGKYSGKFTEEIRLDATAAEYMQYLEPACGQTILVGVECEANGEYNGRPQFKYKMTYPKGSQKPTVPDALPDAPPF*
Ga0114970_100075992F005588N/AMITTIRPNKMPTLWWLVPWAYARTLHMSANALKAYADRLEDLHDLQRTIIEDQAADIRLLRQRVRDQDDAIIRGTAITPDAYPHE*
Ga0114970_100075993F000957GGAMSNFAHLEGMRNLILEIYEVNERIMTGDIISAKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV*
Ga0114970_100075999F015597N/AVSDPIEDAFKSLHQGNLLAAKDARIKQLEERLESMREAGDAIWYCVRHAQRVDPAELIEAIEDWQEARNHA*
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