Scaffold Ga0114966

Basic Information
Taxon OID	3300009161 Open in IMG/M
Scaffold ID	Ga0114966_10035532 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009161 Open in IMG/M

Scaffold ID

Ga0114966_10035532 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3636
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3636

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F070122	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100355322	F009961	GGAGG	MTIDYKIDAMFELRKFLWKELKDAGIFNQRDYYSDNLGVEIIPIIPVQQSPEIDQFLNGKKHIVYDKIGLSYEENWMICCEKILFTIYSTDITDIYETRNLMTDLFRRMDESAKDVNKNKETNKLIFHSIHIVETSPIDPSTELKGFMSTDVILEVKYSRTTDSRGRFN*
Ga0114966_100355323	F012456	GGAG	LDSSVALIETASGLERLMAGSVPGIIRDSTVAQVSAFLYYEAAVLSKLTTNAEFKNLFKTTIFNQIDKDFGDYIDSQARVRPKSLHHMYEWQKAGLPTARLFKLSRIDIDGLSFRINYDFKLSKSSVPSKNKKQKKKYIFANKALVMETGMPVIIRPRSAERLVFELDGETVFMPKGSSVTVRRPGGAQATNQFSLSFGRFFGGQLVNASIKSSGLQRIFNSRMTKALNVPMNIKKVQYSFSAGKIRSQADASLQSAFGGSL*
Ga0114966_100355324	F070122	N/A	MSLATSLMPMKIDIYLQIDAQDINTGAIKKEWSYHKTMPCAAKGMISNSGTGRGGDKQILNNKYANEQMIEIRTVDQITYREKVTNVRDMSENVIWKELNYPTNTPTVFEVISSTPITDPFGNVLAYNSVAKRSENQEIGF*
Ga0114966_100355326	F001106	AGGAG	MSFDTLKVAELKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYESTVEAIEKDTEEIEILPKFDPKAQPENTILVRMTRDNHRYDIHGYTFTKDHPFVAMSEEDAQKIFDTEEGFRLATPKEVQDFYS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114966_10035532

Overview

Ecosystem & Geography

Associated Families

Sequences