NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10005114

Scaffold Ga0114978_10005114


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10005114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10525
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001968Metagenome / Metatranscriptome610Y
F004314Metagenome / Metatranscriptome444Y
F004546Metagenome / Metatranscriptome433Y
F050990Metagenome / Metatranscriptome144Y
F104427Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1000511419F104427GGAMNNEDLQSFITAFDDFMKHFETEELYYEGRMVYENHRAEALRIREEQIEAKAAELEITVDYYMAEFM*
Ga0114978_1000511428F004314AGGAMYDDYDLDYTYTNDASYDLEEYTQDLDEDYARDAHDYESLAYRHYA*
Ga0114978_1000511431F001968GAGMEDTLWSEIADMEGEIFDLDIPELKQEKFDFNEYLNANYDY*
Ga0114978_1000511433F050990GGAMPDSYGFVGDGVTFLGLIGVISTAIIVITVFRSYSKSPLRK*
Ga0114978_100051145F004546GGAGGMTKQEEYPFDQFPWKLMHKDGKDGKETRKCYFQSEEHMKKHITRYNLKKKDYTIGYKYE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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