| Basic Information | |
|---|---|
| Taxon OID | 3300009159 Open in IMG/M |
| Scaffold ID | Ga0114978_10001240 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21580 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (61.54%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008677 | Metagenome | 329 | Y |
| F015057 | Metagenome | 257 | Y |
| F029327 | Metagenome | 188 | Y |
| F074332 | Metagenome / Metatranscriptome | 119 | Y |
| F082120 | Metagenome / Metatranscriptome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114978_1000124010 | F074332 | AGGAG | MTQNHLAQYNVEELQGYFSDFHKDFYGFRPRTLGSSEDWNNRSWLEAQITRIHDTMDAMKETFVGREELRRQGWVVDEAEFDNIVDPKEYAEWSADADAVAYGEAQ* |
| Ga0114978_1000124011 | F029327 | GGAGG | MGFYKNIEIEIMEWQARGRSVEDTYIYFKDYVTHEDVIRIFARDCDEETV* |
| Ga0114978_1000124021 | F015057 | GGTGG | MNPIKLLADGVDSLWLWTYGIIAGWGLTFTIIVVALVLVVIRTINLQRRVDRLENRLITAERDYNLTVNNWKSK* |
| Ga0114978_1000124025 | F082120 | N/A | VFIEFKLPQDESYGYVLNLIRLDIVDWATRYNIPYTQKTIKYTHRLAFDQDRFYTVFATTWNSKLEYQIIDRQW* |
| Ga0114978_100012405 | F008677 | AGG | MIVEKDRVYTFKLTNADEVVGKIIDITDDAYIVSQPLSAVPTEKGLQLIYTVFTGDPKQNATINKTAVAMICQTREEVGDHYLEATTGLKPVRKPSIIMG* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |