Scaffold Ga0111538_10098584

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111538_10098584

Scaffold Ga0111538_10098584

Overview

Basic Information
Taxon OID	3300009156 Open in IMG/M
Scaffold ID	Ga0111538_10098584 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3715
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015492	Metagenome / Metatranscriptome	254	Y
F029488	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111538_100985843	F029488	N/A	MHLSALILPLIILLLAGCAAGYSPECVTGTGTKDCATGTLGHQQLTQEREGEETVASIDDARCRAFATSGSSEYLACRQRVAKSRNAGR*
Ga0111538_100985845	F015492	GAGG	MAMRRQIWVFATAMLALIYPDLQSGARAQVFDFGQIEGFESLGSGTQTGGSPPKTIVDDNQRHTVLFTILESNTEAKIYWKSKDGSQTTIMRGQGLRAFQTIGEFRVEATGDSSRSFRYGYVLLRLKSEKGAQEDRI*

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