Basic Information | |
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Taxon OID | 3300009155 Open in IMG/M |
Scaffold ID | Ga0114968_10000576 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27142 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (85.71%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003784 | Metagenome | 468 | Y |
F007691 | Metagenome / Metatranscriptome | 346 | Y |
F016784 | Metagenome / Metatranscriptome | 244 | Y |
F020684 | Metagenome | 222 | Y |
F023834 | Metagenome | 208 | Y |
F082391 | Metagenome / Metatranscriptome | 113 | Y |
F093528 | Metagenome | 106 | Y |
F095162 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114968_1000057610 | F020684 | AGGAG | MVLSNYALTIEEEAVCVEVGYQRQKPYFADPMKNVNYSEGDLWEMWQHVVCAGSELAFARMVGKYDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSSRDNDNLVYVLMSDGLCHKTRRVGPDWKGPEYKAIGWKLGSECKRDEWRYNDRTWYVPVIYLNPMESLIFNGE* |
Ga0114968_1000057614 | F003784 | GAG | MDYSGTDFAAYGLSSPEPRQVQRDTGSKTATNPLVDHAAVTGYRALGVSTEDLTSFIESFASLRAQRVKGVGHKQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE* |
Ga0114968_1000057618 | F095162 | GGAG | MESEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPDTYKELLEKEKVSDEQEGKAWIDLNGTTIAPRIVARAKARGITFTETSTNQGNNGGEA* |
Ga0114968_1000057620 | F023834 | AGAAGG | MNKEYWQAKAELCRDLALIQIQEEETEKEAGMNLMRMTYALSMVDVYSEGQGENE* |
Ga0114968_1000057622 | F093528 | AGG | MSEERSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPDKSVSDVVKEIQEEAGE* |
Ga0114968_1000057626 | F007691 | AGGCGG | METINELINEIYEDNYSHLEFDDNMGGDCDCHIHTTLKTIVKYSGEGEGE* |
Ga0114968_1000057635 | F082391 | GGAGG | VDNNNKVPRSVHFADFLVIFAGLLHNILSAIQAFTEELMEVAVYNANRNSEVSKVWEQFSNDLEKIEEDTDGR* |
Ga0114968_100005765 | F016784 | AGGA | MDLNTFDYVEPEFKNVIATGEYAAHYWFEQGWKACRLAFLLHKQAEEAGALRV* |
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