NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000576

Scaffold Ga0114968_10000576


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000576 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27142
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (85.71%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003784Metagenome468Y
F007691Metagenome / Metatranscriptome346Y
F016784Metagenome / Metatranscriptome244Y
F020684Metagenome222Y
F023834Metagenome208Y
F082391Metagenome / Metatranscriptome113Y
F093528Metagenome106Y
F095162Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000057610F020684AGGAGMVLSNYALTIEEEAVCVEVGYQRQKPYFADPMKNVNYSEGDLWEMWQHVVCAGSELAFARMVGKYDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSSRDNDNLVYVLMSDGLCHKTRRVGPDWKGPEYKAIGWKLGSECKRDEWRYNDRTWYVPVIYLNPMESLIFNGE*
Ga0114968_1000057614F003784GAGMDYSGTDFAAYGLSSPEPRQVQRDTGSKTATNPLVDHAAVTGYRALGVSTEDLTSFIESFASLRAQRVKGVGHKQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE*
Ga0114968_1000057618F095162GGAGMESEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPDTYKELLEKEKVSDEQEGKAWIDLNGTTIAPRIVARAKARGITFTETSTNQGNNGGEA*
Ga0114968_1000057620F023834AGAAGGMNKEYWQAKAELCRDLALIQIQEEETEKEAGMNLMRMTYALSMVDVYSEGQGENE*
Ga0114968_1000057622F093528AGGMSEERSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPDKSVSDVVKEIQEEAGE*
Ga0114968_1000057626F007691AGGCGGMETINELINEIYEDNYSHLEFDDNMGGDCDCHIHTTLKTIVKYSGEGEGE*
Ga0114968_1000057635F082391GGAGGVDNNNKVPRSVHFADFLVIFAGLLHNILSAIQAFTEELMEVAVYNANRNSEVSKVWEQFSNDLEKIEEDTDGR*
Ga0114968_100005765F016784AGGAMDLNTFDYVEPEFKNVIATGEYAAHYWFEQGWKACRLAFLLHKQAEEAGALRV*

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