| Basic Information | |
|---|---|
| Taxon OID | 3300009151 Open in IMG/M |
| Scaffold ID | Ga0114962_10010194 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6969 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (77.27%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044486 | Metagenome / Metatranscriptome | 154 | Y |
| F072324 | Metagenome / Metatranscriptome | 121 | Y |
| F085611 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114962_1001019416 | F072324 | AGGAG | MLEITKFDGGFTAQNNDVKNCEAIVFAESVRTGRTMLQVINYVLEQDDSDTNLLCACETLQQEIVTAYTNTILESYLDNELYKVQHNK* |
| Ga0114962_1001019418 | F044486 | GGA | MLNTILKWSGCATVCAGALCTSLRIDPLNIYFLNAGALLYLLWALRIGERNLIVVNAVLLALYLVGLFY* |
| Ga0114962_100101944 | F085611 | GAG | MTWEFYEVWSVDEDGHEELIDTTQSLKEARLLAEQSLTEYYAECIIYKEDANGDLQELERLTL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |