NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10005947

Scaffold Ga0114962_10005947


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10005947 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9506
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003626Metagenome / Metatranscriptome476Y
F010321Metagenome / Metatranscriptome305Y
F019827Metagenome / Metatranscriptome227Y
F028170Metagenome / Metatranscriptome192Y
F100414Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1000594713F003626N/AMKEWIAKYQKAIVGTGAVAVLVVCYFQQKELTKLRAEQKIEVLVGGDIEKANLIDSLHDELFNANVQNGRYELSLQHLYEVNPKAAKEFDDYMAHETE*
Ga0114962_1000594717F010321N/AMEIKSFDELQLQELQRYNNALVSQSLQPEDIKRMNRKMFNPQTGELQLLVDNGNGGVKMAAVNIFE*
Ga0114962_1000594721F019827N/AMATDILRGTKRKPYSASRVRKMRSERLLTKAKKEGVSNDQVQHYLGKLQAAGHMRLGGMKSFDTKIDADVFSDGKAIKSTTIRFDAIIEKGMGERPHMTGYLTSASDSDKQYKLKGWFNEDGTFRIELVN*
Ga0114962_100059475F100414GGAMNSKYICQYCGKSTYDVDIDYLVGYNHLSCDLESQNKAFQKKKKPMEIKNWKKLNSQKFDVMGASFVIMDTSEPGLSDGTIYTAWVYPYNDSEAFLRVTLFSNDMQLQVKVLPPGQFTIPPMDLTTTLTKVHLSNPSIFIQTIAEGLLDDPTVRNIIEFIGRKQDENRRTKGTGYSPGPGISGSSGNNLW*
Ga0114962_100059479F028170N/AMPLKKLMKGLESSLKQEREIHPKTWLGELFHKFKIRNIENRIIDIKAELYNRKTKK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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