Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10001104 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10001104 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23486
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (58.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23486

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (58.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007911	Metagenome / Metatranscriptome	342	N
F014487	Metagenome / Metatranscriptome	262	Y
F024499	Metagenome / Metatranscriptome	205	N
F041639	Metagenome	159	N
F057981	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000110417	F057981	N/A	MSDNLEQDLDEAFIAPDTFFKGEKLAPYTEGSRLLMLQVRDEADSAIYFVWSFVYIHILLAQDRRAAIKLAWDRDAFREKLLDWSENMTEEDRTTASLVCSSVLGVANKARVNVIPGALAEAAPPNA*
Ga0114962_1000110420	F007911	GGAG	MAAVTMLDRLIEAAFKELISPVVTAPTYHLSHDATENVPPSIVIKATMGSEEPVRGSGVFSLPVEIIFTERQDDVTTSSHSAQCSQILQCFYDATNLSARLNATTAIGLARTYSAKLESSEANAENEERTIGQTYKLTVIAYPGSIAS*
Ga0114962_1000110424	F024499	N/A	MSEFTDALKESLAVLHGQTGTTVTIGSTAVTGILSTITRKENVELGGFDLDLNTTFTIDVSLLANAPTIGSVLVANSVSYRIVTVDTSIGSYLLGLREK*
Ga0114962_100011043	F006891	GAG	MSSDQVADLSERLSEVRISVARIETRQSVILDVLERSQASLGEYHGRLREMENSAHSLRTKIWLISVCAGAICSMVWELVKRRIGL*
Ga0114962_1000110431	F041639	N/A	MGRRPNTAILAQIAATGASNRQARRQLEKATGPAVTKAIKVVEGIGLDGEIDRLESLAATLGEAAKQAVGPERSSLIGDYTRVVESLRKMKGDRPDINEAEGKMVPIDEADKILAARDNALIPLLKGMAKRLAPICANRPASEVQTEVENEVGQIMRQVEAAL*
Ga0114962_100011045	F014487	N/A	MPLLLLALFLCSCSPKHTENNALPNYEMMQAAEDAGRTPSTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10001104

Overview

Ecosystem & Geography

Associated Families

Sequences