NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118671_1011427

Scaffold Ga0118671_1011427


Overview

Basic Information
Taxon OID3300009121 Open in IMG/M
Scaffold IDGa0118671_1011427 Open in IMG/M
Source Dataset NameSyntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.A IDBA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3166
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location
Location NameSeattle, WA
CoordinatesLat. (o)47.652555Long. (o)-122.304991Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005744Metagenome / Metatranscriptome391Y
F010099Metagenome / Metatranscriptome308Y
F042353Metagenome / Metatranscriptome158Y
F043951Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0118671_10114273F010099N/AMVDSQTSFWTPARIGAVIGAVLLIVALAYLVSLPQNQFQPADLLQPRYAADADLGYWMVNKYDQEVDVYHLLVVMQHDNGTFEWLEGDGIWLPRRAVEGTFTVIGSFDRRKAHL*
Ga0118671_10114276F042353AGGTGGMASNTLPATLTGDARRRLERIIRDDLEHATVSSAMVLVEESGRIVINELVLRLDDGRMVTLMPLDVSAETAVDLRLDVYDDHLPGGHGWREATVDDDYAEELADAVEGAGL*
Ga0118671_10114278F043951AGGAGMEHLSLGRPIEASLGPRYQCPICGLKLWTIQAPWTQWQEWYKTEDGRRHYKHSCNIMRDALVMFRRMFGQDW*
Ga0118671_10114279F005744AGGAMFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWEGLLRLHELIHDRIALEGYVCETCDTKGCYRPATWEIECRGAGVASCLIYSCDDHCPDPAILSPQDEIRRLAENRKVD*
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