| Basic Information | |
|---|---|
| Taxon OID | 3300009111 Open in IMG/M |
| Scaffold ID | Ga0115026_10100046 Open in IMG/M |
| Source Dataset Name | Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1766 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Old Woman Creek National Estuarine Research Reserve, Ohio, USA | |||||||
| Coordinates | Lat. (o) | 41.2239 | Long. (o) | -82.3039 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031406 | Metagenome / Metatranscriptome | 182 | Y |
| F061679 | Metagenome | 131 | N |
| F074572 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0115026_101000461 | F061679 | GAGG | MHCTICDKLLNDYESTRKTLDGKYLDMCQDCYTGLDVLIPTIDRKDLLHEADMPSMEQIFDEYGDYVGYDDYDDL* |
| Ga0115026_101000462 | F031406 | AGGAGG | MNHNEEARYHFILMDMVDLIGDYGFDTVMADLDVAIADKVNRLVSRAVAEDSDD* |
| Ga0115026_101000465 | F074572 | AGG | MSILIRGCVISAFFFGILVGYITGRMEWSHEDCYDATGKYQRYEAWLSVKNGTYRCFWIETEFPHRVKMQGVIDVK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |