Scaffold Ga0117901_1074079

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0117901_1074079

Scaffold Ga0117901_1074079

Overview

Basic Information
Taxon OID	3300009103 Open in IMG/M
Scaffold ID	Ga0117901_1074079 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2118
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	143
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028526	Metagenome / Metatranscriptome	191	Y
F051452	Metagenome	144	Y
F073653	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_10740792	F073653	GGA	MADQEINQTILKTLRGSAHEFGKMSSPTAGVDTEGTSKKGKKYEGFTFGISARMDGEVKVFGKNFILINWQVGRQWENQVCRSLNEAENWFRSDEWAGNEEEEAF*
Ga0117901_10740793	F028526	GAGG	MEEYLGEVKTKPELFLKLTKRISKPDYTMHFMVDRNGRKAMFYNYKGPEFREGDCVLLKATIAEHRRDRYNSEPLTYINRVTILENKGSTK*
Ga0117901_10740797	F051452	GAGG	MTTTEIIRNRMNRAMSSKGKTFIWNPRSKFNVKRKIKDVRLTFGNNVELTFFHPLPSKTSRLFTIKPTFECMEDFCIVD*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.