Scaffold Ga0117901_1069153

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117901_1069153

Scaffold Ga0117901_1069153

Overview

Basic Information
Taxon OID	3300009103 Open in IMG/M
Scaffold ID	Ga0117901_1069153 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2220
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	143
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026403	Metagenome / Metatranscriptome	198	Y
F035486	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_10691531	F035486	GGAGG	VLQRCSDPNCNRYATIYHPAPYCDRDWARRHSTQFDEAVAKELGLPTANVPYRKYLEWQLKNRGLSKQPDESREEQFERCKARARKSKLLSR*
Ga0117901_10691532	F026403	AGG	MRASYGLERLVKKAQGLERKVEFDLVKTGTTKIETYKNRCLGYIERLGMLTNVSKQDKEVAARKMYKVYFNLQDYEGSEKETDMEVSLESLLPELDMAIVESYAADARTGGLGFSSTRGLMLAEGLSAPKNPYWRAENEAKAGVGKEGNALIGLGFDRDLYREPQDVVQWRKDMKKQKAEVLRATKMQ*

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