NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102851_10038776

Scaffold Ga0102851_10038776


Overview

Basic Information
Taxon OID3300009091 Open in IMG/M
Scaffold IDGa0102851_10038776 Open in IMG/M
Source Dataset NameFreshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3720
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie, Old Woman Creek
CoordinatesLat. (o)41.384Long. (o)-82.513Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018395Metagenome / Metatranscriptome235Y
F020198Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0102851_100387762F018395GAGMGGVPMSTGLKLDRLDTAYAEKAHELSLKNRNWLRHGIGTTADKIDEMLLDGATIEQMAKRAKTTKATVSVHLSHLRKEHKLAIIKKDGVLRYDVDRMNGNRKTKKVPGKSRNTG*
Ga0102851_100387763F020198AGGAGMIVIPHKKLKSREATMTYLLDPARLTSFILDLRTYLRSTQYLCQKKGSENDPRQCVHRSMYDKPETVFFRRFYHFCYERGLDWDGAREMMEIMLSERFLCECEMVGRLTDEQVEEILAGRRNR*
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