NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105090_10354235

Scaffold Ga0105090_10354235


Overview

Basic Information
Taxon OID3300009075 Open in IMG/M
Scaffold IDGa0105090_10354235 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)896
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013751Metagenome / Metatranscriptome268Y
F016644Metagenome / Metatranscriptome245Y
F051708Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0105090_103542352F013751GGAGMQTDVLATKPLTATGNFKAQNNGDIPRTRIKAIYAINGGSAGSVVIREGGNTGTIIATIDTAASSTAGYTIIPVPGQGVLCKEGDLHGTVTNTTSVVLFYG*
Ga0105090_103542353F051708N/AMLAHKDPEVQAMLGLLESQRDHAMGIVAAMAKENAELKARMLEVTKPEQQNDDAN*
Ga0105090_103542354F016644N/AGDAGVTTCRSAFGVAMAQTTGGSGFEYGLDLKMQDPVLDGGGPSGVIPYTKANIRMEDDVVVMVATGVPTDGTTGDNFAGPGSMYIDSTGANLYIQTGAITSPVWKLVTRAA*
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